BYM711 - MICROSCOPIC and SPECTROSCOPIC TECHNIQUES
| Course Name | Code | Semester | Theory (hours/week) |
Application (hours/week) |
Credit | ECTS |
|---|---|---|---|---|---|---|
| MICROSCOPIC and SPECTROSCOPIC TECHNIQUES | BYM711 | Any Semester/Year | 3 | 0 | 3 | 9 |
| Prequisites | - | |||||
| Course language | Turkish | |||||
| Course type | Elective | |||||
| Mode of Delivery | Face-to-Face | |||||
| Learning and teaching strategies | Lecture Question and Answer | |||||
| Instructor (s) | Assoc. Prof. Dr. Gökhan Demirel, Asst. Prof. Hadi Zareie, Prof. Dr. Bekir Salih | |||||
| Course objective | It is a graduate-level course that will cover the fundamentals of microscopic and spectroscopic techniques with a focus on applications in biomedical research and their principles. One of objectives of the course is also to facilitate a means through which biologists, chemists, physicists and engineers can communicate. | |||||
| Learning outcomes |
| |||||
| Course Content | To give general knowledge about microscopic and spectroscopic techniques. | |||||
| References | ? Surface Enhanced Raman Spectroscopy: Analytical, Biophysical and Life Science Applications, Sebastian Schlücker, Wiley, 2010. ? Surface Plasmon Resonance Based Sensors, Jiri Homola, Springer, 2006. | |||||
Course outline weekly
| Weeks | Topics |
|---|---|
| Week 1 | ? Scanning electron microscope: |
| Week 2 | ? Scanning electron microscope: ? SEM Imaging Processes and SEM Signal Detectors ? SEM contrast formation and image quality and other contrast mechanisms ? High resolution imaging and signal processing ? Dimensional measurements ? Electron backscatte |
| Week 3 | ? Scanning probe microscopy: ? Introduction to scanning probe microscopy. Instrumentation: positioning devices, probes, data acquisition/electronics and vibration isolation concepts. STM: principle and practical applications, methods for imaging and |
| Week 4 | ? AFM: principle and practical applications, methods for imaging, force curves, sample and probe preparation. |
| Week 5 | ? Related SPM techniques: principles and practical applications;Applications of SPM in: condensed matter, chemistry, nanotechnology and biology. Data processing and interpretation. Sensor applications based on SPM. |
| Week 6 | ? Elipsometry and Surface Plasmon Resonance |
| Week 7 | ? Raman and Surface Enhanced Raman Spectrocopy |
| Week 8 | ? Mid-term |
| Week 9 | ? Mass Spectroscopy |
| Week 10 | ? Mass Spectroscopy applications |
| Week 11 | ? Chromatographic Techniques (HPLC, GC, GC-MS) |
| Week 12 | ? Matrix-assisted Laser Desorption/Ionization (MALDI) Mass Spectrometry, |
| Week 13 | ? Electro Spray Ionization Mass Spectrometry (ESI-MS) and Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS). |
| Week 14 | ? Atomic Absorption Spectrometry (AAS), HPLC-AAS, GC-AAS |
| Week 15 | ? Preparation to final exam |
| Week 16 | ? Final exam |
Assesment methods
| Course activities | Number | Percentage |
|---|---|---|
| Attendance | 0 | 0 |
| Laboratory | 0 | 0 |
| Application | 0 | 0 |
| Field activities | 0 | 0 |
| Specific practical training | 0 | 0 |
| Assignments | 2 | 15 |
| Presentation | 1 | 10 |
| Project | 0 | 0 |
| Seminar | 0 | 0 |
| Midterms | 1 | 25 |
| Final exam | 1 | 50 |
| Total | 100 | |
| Percentage of semester activities contributing grade succes | 1 | 50 |
| Percentage of final exam contributing grade succes | 1 | 50 |
| Total | 100 | |
WORKLOAD AND ECTS CALCULATION
| Activities | Number | Duration (hour) | Total Work Load |
|---|---|---|---|
| Course Duration (x14) | 14 | 3 | 42 |
| Laboratory | 0 | 0 | 0 |
| Application | 0 | 0 | 0 |
| Specific practical training | 0 | 0 | 0 |
| Field activities | 0 | 0 | 0 |
| Study Hours Out of Class (Preliminary work, reinforcement, ect) | 14 | 7 | 98 |
| Presentation / Seminar Preparation | 1 | 30 | 30 |
| Project | 0 | 0 | 0 |
| Homework assignment | 2 | 15 | 30 |
| Midterms (Study duration) | 1 | 30 | 30 |
| Final Exam (Study duration) | 1 | 40 | 40 |
| Total Workload | 33 | 125 | 270 |
Matrix Of The Course Learning Outcomes Versus Program Outcomes
| D.9. Key Learning Outcomes | Contrubition level* | ||||
|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | |
| 1. Ability to understand and implement pure sciences, mathematics and engineering in higher level, | X | ||||
| 2. Ability to conduct intra- and inter-disciplinary studies; to gain required methodological skills for conducting the research, | X | ||||
| 3. Ability to analyse, synthesize and evaluate the current ideas and developments in the specialized area, | X | ||||
| 4. To have a qualification to conduct a comprehensive research that bringing new insights into science and technology, that leading to a novel methodology or technological product/process; or that leveraging a known methodology to another area, | X | ||||
| 5. To contribute to the scientific and technological literature by disseminating the outcomes of scientific studies in international and national academic grounds, | X | ||||
| 6. To evaluate the scientific, technological and social developments and to transfer them to the society by considering scientific neutrality and ethical responsibility, | X | ||||
| 7. Ability to have a verbal and written communication skills in at least one foreign language at a European Language Portfolio C1 General Level, | X | ||||
| 8. Ability to understand theeffects of engineering solutions and practice in the problems related to the biological systems and to build awareness of the legal outcomes. | X | ||||
*1 Lowest, 2 Low, 3 Average, 4 High, 5 Highest